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Course info
KME / TZCH
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Course description
Department/Unit / Abbreviation
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KME
/
TZCH
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Academic Year
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2023/2024
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Academic Year
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2023/2024
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Title
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Thermodynamics of Living and Chem. Syst.
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Form of course completion
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Exam
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Form of course completion
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Exam
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Accredited / Credits
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Yes,
5
Cred.
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Type of completion
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Oral
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Type of completion
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Oral
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Time requirements
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Lecture
3
[Hours/Week]
Tutorial
1
[Hours/Week]
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Course credit prior to examination
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Yes
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Course credit prior to examination
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Yes
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Automatic acceptance of credit before examination
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Yes in the case of a previous evaluation 4 nebo nic.
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Included in study average
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YES
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Language of instruction
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Czech
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Occ/max
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Automatic acceptance of credit before examination
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Yes in the case of a previous evaluation 4 nebo nic.
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Summer semester
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0 / -
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0 / -
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0 / -
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Included in study average
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YES
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Winter semester
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0 / -
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0 / -
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0 / -
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Repeated registration
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NO
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Repeated registration
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NO
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Timetable
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Yes
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Semester taught
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Winter + Summer
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Semester taught
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Winter + Summer
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Minimum (B + C) students
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10
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Optional course |
Yes
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Optional course
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Yes
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Language of instruction
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Czech
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Internship duration
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0
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No. of hours of on-premise lessons |
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Evaluation scale |
1|2|3|4 |
Periodicity |
každý rok
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Evaluation scale for credit before examination |
S|N |
Periodicita upřesnění |
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Fundamental theoretical course |
No
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Fundamental course |
No
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Fundamental theoretical course |
No
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Evaluation scale |
1|2|3|4 |
Evaluation scale for credit before examination |
S|N |
Substituted course
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UMS/TZCH
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Preclusive courses
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N/A
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Prerequisite courses
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N/A
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Informally recommended courses
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N/A
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Courses depending on this Course
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N/A
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Histogram of students' grades over the years:
Graphic PNG
,
XLS
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Course objectives:
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Student will understand following problems:
- Structure of thermodynamics - simple systems, second law of thermodynamics, entropy.
- Problems of equilibrium - entropy production, thermodynamical fluxes and forces, dissipative structures.
- Stability.
- Fundamentals of chemical thermodynamics, autocatalysis reactions, cycles.
- Chemical reactions in living systems, energy fluxes, conformation changes of protein molecules.
- Molecular engines, work at the molecular level, flagellums, muscle mechanism.
- Open problems.
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Requirements on student
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Credit requirements:
Test (in the range of taught lessons).
Examination requirements:
Students must present knowledge of the subject matter in a verifiable way.
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Content
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1. What is the thermodynamics about, the notion of work, the notion of heat. First law of thermodynamics, energy. Simple system. Second law of thermodynamics, heat as a differential form, entropy. Second law of thermodynamics and living systems.
2. Illustration of thermodynamics - ideal gas, "90 percent" equation, entropy production, thermodynamical fluxes and forces, linear thermodynamics.
3. Fundamentals of chemistry, chemical bond, chemical reactions, catalyst, exothermic and endothermic reactions.
4. Systems with particles exchange and chemical reactions (electrochemical potential, affinity, Guldberg-Waage law).
5. The notion and the meaning of stability, stability and a formation of structures (simple illustration on the diffusion equation with non-linear term), second differential of entropy.
6. Basic classification of thermodynamical systems upon stability: equilibrium, near to equilibrium, far from equilibrium. Dissipative structures.
7. Chemical reactions in systems far from equilibrium, stability, meaning of autocatalysis reactions for living systems.
8. Proteins and their conformations, ligands, mechanisms of motion in living systems. Structure of living cell, cytoskeletal network.
9. Fundamentals of macromolecular physics, polymer chains, examples.
10. Fractals - basic ideas, mathematical model of a fractal curve, fractal surfaces in living systems - connection with metabolism.
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Activities
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Fields of study
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Guarantors and lecturers
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Literature
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Time requirements
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All forms of study
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Activities
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Time requirements for activity [h]
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Contact hours
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52
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Preparation for comprehensive test (10-40)
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30
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Preparation for an examination (30-60)
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60
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Total
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142
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Prerequisites
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Knowledge - students are expected to possess the following knowledge before the course commences to finish it successfully: |
orientovat se na úrovni základního kurzu fyziky KFY/FYA1 |
orientovat se v diferenciálním a integrálním počtu |
orientovat se v základech maticového a vektorového počtu |
Skills - students are expected to possess the following skills before the course commences to finish it successfully: |
integrovat a derivovat (rovněž parciální derivace) |
řešit základní typy obyčejných diferenciálních rovnic |
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Learning outcomes
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Knowledge - knowledge resulting from the course: |
orientovat se v otázce druhého termodynamického zákona a obecného principy nerovnovážné termodynamiky |
vysvětlit základy chemické termodynamiky |
orientovat se v základních způsobech fyzikálního popisu živých organismů |
orientovat se v otázce rovnovážná termodynamika jako kompletní, logicky propojený systém |
vysvětlit pojem entropie |
Skills - skills resulting from the course: |
řešit jednoduché úlohy z rovnovážní nerovnovážné termodynamiky, má však dobrý základ i pro řešení složitějších problémů z oblasti živých systémů a chemických reakcí |
velmi dobře své znalosti uplatnit i v pedagogickém působení na všech úrovních terciárního vzdělávání |
student je schopen uplatnit své odborné znalosti k další specializaci v oblasti kontinuální fyziky a termomechaniky |
student je schopen velmi dobře získané znalosti uplatnit i v pedagogickém působení |
Competences - competences resulting from the course: |
N/A |
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Assessment methods
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Knowledge - knowledge achieved by taking this course are verified by the following means: |
Oral exam |
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Teaching methods
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Knowledge - the following training methods are used to achieve the required knowledge: |
Lecture |
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